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read counting
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reset
4
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2.9k
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Problem with summarizeOverlaps() when reading >1 BAM file: "stop worker failed"
summarizeoverlaps
rnaseq
bplapply
rangedsummarizedexperiment
read counting
7.9 years ago
ErickF
▴ 40
1
vote
4
replies
2.0k
views
Gviz sashimi read count
Gviz
sashimi
sashimi plots
read counting
bam
updated 7.2 years ago by
Robert Ivanek
▴ 730 • written 7.2 years ago by
bernt.popp
• 0
1
vote
4
replies
2.0k
views
DiffBind error with dba.count after update
diffbind
read counting
warning message
chromatin
atac-seq
updated 6.5 years ago by
Gord Brown
▴ 650 • written 6.5 years ago by
tgjohnst
• 0
0
votes
1
reply
1.1k
views
featureCounts : limits on multioverlap (option -O)
featurecounts
read counting
updated 6.2 years ago by
Gordon Smyth
50k • written 6.2 years ago by
marc.gabriel.01
• 0
3
votes
2
replies
969
views
counting the sequencing reads in 10kb regions on a genome-wide scale
read counting
CNV
rsamtools
updated 6.2 years ago by
James W. MacDonald
65k • written 6.2 years ago by
Bogdan
▴ 670
1
vote
12
replies
3.9k
views
Problem with summarizeOverlaps function
genomicalignments
read counting
8.7 years ago
kgorczak
▴ 10
6 results • Page
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Comment: DSS CpG coverage threshold
by
j.gilbert
• 0
Might be a bit late for the original poster :') but in case anyone else is wondering, the DSS user guide says: *Q: Do I need to filter out…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Michael Love
42k
Segmentation is of the whole genome, I'll write some code for doing this later today.
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Michael Love
42k
I'll take a look later. For next time, I've edited your post by enclosing the code in triple backticks (on their own link). This properly …
Comment: deseq2 results
by
sajadahmad41454
• 0
could you please tell me if the results are fine or not? ![pca summary][1] ![pca plot][2] [1]: /media/images/ee7d8693-bcbe-4a7a-a566-d3…
Answer: normalization using Deseq2
by
ATpoint
★ 4.1k
counts(dds, normalized=TRUE)
Votes
A: Volcanoplot with limma - RAW P-values or Adj.P-Values
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Answer: minfi latest update for EPIC V2 chip
A: Error in DESeqDataSet : some values in assay are not integers
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